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Guides

How to Architect a Hybrid Cryptography System for Transitioning to PQC

A developer guide for implementing hybrid cryptographic systems in decentralized identity (DID) to ensure quantum resistance while maintaining compatibility.
Chainscore © 2026
introduction
POST-QUANTUM TRANSITION

Introduction: The Need for Hybrid Cryptography

A practical guide to designing cryptographic systems that combine classical and quantum-resistant algorithms for a secure migration.

The advent of large-scale quantum computers poses an existential threat to widely used public-key cryptography. Algorithms like RSA and Elliptic Curve Cryptography (ECC), which secure TLS connections, digital signatures, and blockchain transactions, rely on mathematical problems (integer factorization, discrete logarithms) that a sufficiently powerful quantum computer could solve efficiently using Shor's algorithm. While such machines are not yet a reality, the 'harvest now, decrypt later' attack model is a clear and present danger, where adversaries collect encrypted data today to decrypt it once quantum computers become available.

Transitioning an entire ecosystem to Post-Quantum Cryptography (PQC) is not an instantaneous switch. New algorithms, such as those selected by NIST (CRYSTALS-Kyber for key encapsulation, CRYSTALS-Dilithium for signatures), are still undergoing standardization and real-world scrutiny for potential vulnerabilities. A sudden, wholesale replacement would be operationally risky and could break interoperability with legacy systems. The solution is a hybrid cryptography architecture, which combines classical and PQC algorithms to provide security both against current threats and future quantum attacks.

A hybrid system provides cryptographic agility and backward compatibility. For example, in a TLS 1.3 handshake, a client and server can negotiate to use both an ECDHE key exchange and a Kyber key encapsulation. The resulting shared secret is derived from both contributions. This approach ensures that breaking one algorithm does not compromise the entire session. It allows systems to deploy PQC gradually, monitor its performance and security, and maintain interoperability with peers that have not yet upgraded, creating a practical path for the post-quantum transition.

For developers and architects, implementing hybrid cryptography involves careful design choices. You must decide on the combination mode (e.g., concatenating keys, combining shared secrets), manage potentially larger key sizes and ciphertexts, and update protocol logic. Libraries like OpenSSL 3.0+ and liboqs are beginning to offer built-in support for these patterns. The goal is to build systems that are not just quantum-resistant tomorrow, but are also robust, maintainable, and interoperable today.

prerequisites
ARCHITECTURE FOUNDATION

Prerequisites and System Requirements

A hybrid cryptography system combines classical and post-quantum algorithms to secure data during the transition to quantum-resistant standards. This guide outlines the technical prerequisites and system requirements for designing such a system.

Before architecting a hybrid system, you must establish a clear cryptographic inventory. This involves cataloging every application, protocol, and data store that uses cryptography, including TLS connections, digital signatures (like ECDSA or EdDSA), encryption (AES), and key derivation functions. For each item, document its cryptographic agility—the ability to swap out algorithms without major code changes. Systems built on inflexible, hardcoded crypto libraries will face significant migration hurdles. Tools like code scanners and dependency checkers can automate this inventory process.

Your development and testing environment must support the new post-quantum cryptography (PQC) algorithms. This requires installing the relevant libraries and toolchains. For development in languages like Go, Rust, or Python, integrate libraries such as liboqs (Open Quantum Safe) or provider-specific implementations like CRYSTALS-Kyber and CRYSTALS-Dilithium. Ensure your CI/CD pipeline can build and test against these dependencies. A critical requirement is access to a quantum-safe random number generator (QRNG) or a cryptographically secure PRNG, as PQC algorithms often have stricter requirements for randomness than their classical counterparts.

The core architectural requirement is a crypto-agile framework. This is a middleware or service layer that abstracts cryptographic operations, allowing you to define and manage algorithm suites. A suite specifies the combination of algorithms to use, for example {KEM: Kyber-768, Signature: Dilithium3, Symmetric: AES-256-GCM}. The framework should support algorithm negotiation during handshakes (e.g., in TLS 1.3 using custom cipher suites) and dual operation modes, where both a classical and a PQC algorithm are executed in parallel for signatures or key encapsulation, ensuring backward compatibility during the transition period.

Performance and operational overhead are major considerations. PQC algorithms generally have larger key sizes, signature lengths, and slower computation times. You must profile the performance impact on your system's latency and throughput. Requirements include provisioning for increased bandwidth (larger certificate chains), storage for bigger keys, and CPU/memory resources for more intensive operations. Establish key lifecycle management processes for the larger PQC keys, including secure generation, storage, rotation, and eventual revocation, which may require updates to your PKI or Hardware Security Module (HSM) configurations.

Finally, a comprehensive testing and validation strategy is non-negotiable. This goes beyond unit tests. You must conduct interoperability testing with other systems implementing the same PQC standards (like NIST's selected algorithms). Failure mode analysis is crucial: test what happens during algorithm negotiation failures or when one algorithm in a hybrid pair fails. Plan for long-term crypto-periods, defining timelines for when classical algorithms will be deprecated and PQC algorithms will become mandatory, ensuring your architecture can execute this transition smoothly.

key-concepts-text
CORE CONCEPTS

How to Architect a Hybrid Cryptography System for Transitioning to PQC

A practical guide to designing a hybrid cryptographic system that combines classical and post-quantum algorithms, enabling a secure and controlled migration for decentralized identity documents.

A hybrid cryptography system is a transitional architecture designed to maintain security against both classical and quantum computing threats. It works by combining a traditional algorithm, like ECDSA or Ed25519, with a Post-Quantum Cryptography (PQC) algorithm, such as CRYSTALS-Dilithium or Falcon. The core principle is that a signature or key exchange is only considered valid if both the classical and PQC components verify successfully. This approach provides cryptographic agility, allowing systems to phase out vulnerable classical algorithms while PQC standards mature and are widely adopted. For decentralized identity (DID) systems, this is critical for ensuring long-term trust in credentials and signatures.

Architecting this system begins with defining the hybrid key pair. A user's DID document will contain two public keys: one for the classical algorithm and one for the PQC algorithm. These keys are cryptographically bound, often through a key derivation process from a single seed or by generating them as a pair. The corresponding private keys are used together to create a hybrid signature. For example, signing a Verifiable Credential involves generating two signatures: Sig_classical = sign(private_key_ecdsa, payload) and Sig_pqc = sign(private_key_dilithium, payload). The resulting verifiable data structure must include both signatures for validation.

The verification logic must be designed to enforce the hybrid requirement. A verifier's algorithm should check both signatures independently and only accept the document if both are valid. This "AND" logic is the security foundation. Implementations can use multicodec prefixes or JOSE headers to identify the combined algorithm suite, such as ES256R-Dilithium2. Libraries like liboqs from Open Quantum Safe provide reference implementations for hybrid schemes. It's crucial to manage key lifecycle events, like rotation or revocation, for both key types simultaneously to maintain the binding and prevent security gaps.

For DID documents, this architecture is specified in the verificationMethod array. A DID document might list two separate verification methods with types EcdsaSecp256k1VerificationKey2019 and Dilithium3VerificationKey, or a single method with a composite type if supported by the DID method. The proof section of a Verifiable Credential would then contain the dual signatures. This design ensures backward compatibility with verifiers that only understand classical crypto, while future-proofing for quantum resistance. The transition can be managed by initially making the PQC signature optional, then required, before eventually deprecating the classical component.

POST-QUANTUM CANDIDATES

PQC Algorithm Comparison for DIDs

Comparison of NIST-selected PQC algorithms for use in Decentralized Identifier (DID) document signatures and key agreement.

Algorithm / MetricCRYSTALS-DilithiumCRYSTALS-KyberFalcon

NIST Security Level

2, 3, 5

1, 3, 5

1, 5

Primary Use Case

Digital Signatures

Key Encapsulation

Digital Signatures

Signature Size (approx.)

2.4 - 4.6 KB

N/A

0.7 - 1.3 KB

Public Key Size (approx.)

1.3 - 2.5 KB

0.8 - 1.5 KB

0.9 - 1.8 KB

Performance (Sign/Verify)

Fast / Fast

N/A

Slower / Fast

Lattice-Based?

Recommended for DID Signing?

Recommended for DID Key Agreement?

architecture-dual-signature
ARCHITECTURE

Step 1: Designing the Dual-Signature Scheme

The foundation of a secure post-quantum migration is a hybrid signature scheme that combines classical and quantum-resistant cryptography.

A dual-signature scheme requires two independent cryptographic signatures on every transaction or message: one using a current standard like ECDSA (Elliptic Curve Digital Signature Algorithm) and one using a PQC (Post-Quantum Cryptography) algorithm, such as Dilithium or Falcon. This architecture, often called hybrid signatures or composite signatures, ensures backward compatibility with existing blockchain validators while introducing quantum resistance. The system must verify that both signatures are valid for the transaction to be accepted, creating a security bridge during the transition period.

The core design challenge is managing key material and signature aggregation. A naive approach of storing two separate signatures doubles on-chain data and gas costs. More efficient designs use signature aggregation techniques. For example, the BLS-Signature library's aggregation property can be combined with a PQC scheme. Alternatively, you can design a smart contract verifier that checks a single, concatenated signature string containing both cryptographic components. The NIST PQC Standardization Process provides the finalist algorithms suitable for this layer.

Implementing this requires a new wallet or signing client. The signing flow must be modified to: 1) generate the transaction digest, 2) sign it with the ECDSA private key, 3) sign the same digest with the PQC private key, and 4) package both signatures for broadcast. The verification contract, deployed on-chain, will then unpack the payload and execute both ecrecover (for ECDSA) and the PQC algorithm's verification function. This ensures nodes not yet upgraded to PQC can still validate the classical signature, while upgraded nodes enforce the dual-check.

Consider performance and state implications. PQC signatures (like Dilithium) are larger than ECDSA signatures—often 2-4KB versus 64 bytes. This significantly increases transaction sizes and costs. You must profile gas usage for the new verification logic and may need to adjust block gas limits. Furthermore, user wallets must securely manage two private keys. A Hierarchical Deterministic (HD) wallet path extension, like m/44'/60'/0'/0/0' for ECDSA and m/44'/60'/0'/1/0' for PQC, derived from a single seed phrase, can simplify key management without compromising security.

This dual-signature phase is temporary but critical. It allows the network to operate seamlessly while the ecosystem—including exchanges, wallets, and oracles—prepares for a eventual hard fork to a pure PQC system. During this phase, you should monitor adoption metrics, such as the percentage of transactions using the hybrid format, and vulnerability reports, using the overlap period to rigorously test the PQC component's resilience in a live environment.

architecture-key-management
DID ARCHITECTURE

Step 2: Managing Multiple Public Keys in a DID Document

A Decentralized Identifier (DID) document is a JSON-LD object that contains the cryptographic material and service endpoints for a DID. To prepare for a post-quantum future, you must architect it to support multiple public keys simultaneously.

The core of a hybrid transition strategy is the ability to manage multiple public keys within a single DID document. According to the W3C DID Core specification, the verificationMethod property is an array that can hold several key entries. Each entry is an object with properties like id, type, controller, and the key material itself (e.g., publicKeyJwk or publicKeyMultibase). For a hybrid system, you will add both a classical key (e.g., Ed25519VerificationKey2020) and a post-quantum key (e.g., JsonWebKey2020 with a PQC algorithm) to this array.

Each verification method must have a unique fragment identifier within the DID URL. For example, a DID did:example:123 could have keys identified as #key-1 and #key-2. You then reference these keys in the document's authentication, assertionMethod, or keyAgreement sections to define their purposes. A common pattern is to list both keys in the authentication array, allowing the DID controller to sign with either. This design ensures backward compatibility while signaling readiness for PQC.

Here is a simplified example of a DID document fragment showcasing a hybrid setup with an Ed25519 key and a hypothetical ML-DSA (Module-Lattice Digital Signature Algorithm) key:

json
{
  "@context": "https://www.w3.org/ns/did/v1",
  "id": "did:example:123",
  "verificationMethod": [{
    "id": "did:example:123#key-1",
    "type": "Ed25519VerificationKey2020",
    "controller": "did:example:123",
    "publicKeyMultibase": "z6MkqRYqQiSgvZQdnBytw86Qbs2ZWUkGv22od935YF4s8M7V"
  }, {
    "id": "did:example:123#key-2",
    "type": "JsonWebKey2020",
    "controller": "did:example:123",
    "publicKeyJwk": {
      "kty": "OKP",
      "crv": "ML-DSA-44",
      "x": "base64url-encoded-public-key"
    }
  }],
  "authentication": [
    "did:example:123#key-1",
    "did:example:123#key-2"
  ]
}

Managing these keys requires careful key lifecycle policies. The DID document should be updated to reflect key rotations, revocations, or deprecations. You can use the verificationRelationship properties to phase out a classical key. For instance, you might remove the old Ed25519 key from the authentication array once all relying parties are confirmed to support the new PQC signature, while keeping it in verificationMethod with a revoked timestamp for audit purposes. Services like DID resolvers and wallets must be able to process documents with multiple key types.

The ultimate goal is to enable a seamless transition. During the hybrid phase, applications can be designed to attempt verification with the PQC key first, falling back to the classical key if the PQC algorithm is unsupported. This approach, managed through the DID document's structure, ensures interoperability and provides a clear, self-contained cryptographic roadmap for any entity interacting with your DID.

architecture-sunset-policy
PLANNING THE TRANSITION

Step 3: Defining a Sunset Policy for Classical Cryptography

A structured sunset policy is critical for managing the phased deprecation of vulnerable classical algorithms like RSA and ECC, ensuring a secure and orderly transition to post-quantum cryptography (PQC).

A sunset policy is a formal timeline and set of rules for phasing out deprecated cryptographic algorithms. For PQC migration, this means defining clear dates and conditions for when classical algorithms like RSA-2048 or ECDSA can no longer be used for new systems, key generation, or digital signatures. The policy should be risk-based, prioritizing the deprecation of algorithms in high-value or long-lived systems first, such as root certificates or hardware security modules (HSMs).

The policy must establish concrete milestones. For example: Phase 1 (Year 1-2): Disallow new deployments using classical algorithms for key establishment. Phase 2 (Year 3-4): Begin rotating existing long-term keys to PQC hybrids. Phase 3 (Year 5+): Complete deprecation, disabling classical algorithms entirely in favor of pure PQC or hybrid modes. This timeline should align with industry standards from bodies like NIST and the projected timeline for cryptographically-relevant quantum computers (CRQCs).

Implementation requires updating internal security standards and automating compliance checks. Integrate the policy into CI/CD pipelines to block code that uses sunsetted algorithms. For existing systems, create an inventory using tools like cryptography libraries to scan for dependencies on RSA, DSA, or ECDH. This audit is essential for understanding the scope of the migration and prioritizing systems based on their cryptographic agility and exposure.

Communicate the policy clearly to all development teams and stakeholders. Provide migration guides and reference implementations for approved hybrid schemes, such as combining ECDH with Kyber for key encapsulation. The policy should also define exceptions processes for legacy systems that cannot be immediately upgraded, requiring formal risk acceptance and compensatory controls.

Finally, the sunset policy is not static. It must include a review mechanism to adjust timelines based on new cryptographic breakthroughs, updated NIST standards (like FIPS 203, 204, 205), and changes in the quantum threat landscape. This ensures the transition remains pragmatic and responsive to real-world security developments.

PQC MIGRATION PATTERNS

Implementation Examples by DID Method

did:key with Hybrid Signatures

The did:key method is ideal for lightweight, self-sovereign identifiers. For PQC migration, you can embed a hybrid public key structure directly in the DID document.

Implementation Pattern: Append a PQC public key alongside the traditional key (e.g., Ed25519) within the same verificationMethod. Clients must support parsing this composite key format.

json
{
  "id": "did:key:z6MkhaXgBZDvotDkL5257faiztiGiC2QtKLGpbnnEGta2doK#z6MkhaXgBZDvotDkL5257faiztiGiC2QtKLGpbnnEGta2doK",
  "verificationMethod": [{
    "id": "#hybrid-1",
    "type": "MultiKey",
    "controller": "did:key:z6MkhaXgBZDvotDkL5257faiztiGiC2QtKLGpbnnEGta2doK",
    "publicKeyMultibase": "zF1h4FVVLm..." // Composite encoding: Ed25519 pubkey + Kyber-768 pubkey
  }]
}

Verification: A verifier extracts both key components, requests signatures from both algorithms, and validates against a policy (e.g., require both, or either). This maintains interoperability during transition.

DEVELOPER FAQ

Frequently Asked Questions on Hybrid PQC Systems

Common technical questions and troubleshooting guidance for developers implementing hybrid cryptography systems to transition to post-quantum security.

A hybrid cryptography system combines classical cryptographic algorithms (like ECDSA or RSA) with Post-Quantum Cryptography (PQC) algorithms (like Kyber or Dilithium). It is necessary because the security of classical public-key cryptography is threatened by quantum computers, which can break them using Shor's algorithm. However, PQC algorithms are new and have not undergone the same decades of cryptanalysis as their classical counterparts.

A hybrid approach provides cryptographic agility and a safety net: the system remains secure if either the classical or the PQC algorithm remains unbroken. This dual-layer protection is the recommended strategy by standards bodies like NIST for transitioning to a post-quantum secure future without immediately deprecating trusted classical algorithms.

common-risks
POST-QUANTUM CRYPTOGRAPHY

Common Risks and Mitigation Strategies

Transitioning to quantum-resistant cryptography requires a hybrid approach to manage cryptographic agility and mitigate risks during the migration period.

01

Cryptographic Agility and Algorithm Lifecycle

A rigid system that cannot update cryptographic primitives is a major risk. Architect for cryptographic agility by implementing a modular, pluggable system.

  • Use a crypto provider interface to abstract algorithm selection.
  • Maintain a registry of approved algorithms with versioning.
  • Plan for a multi-phase lifecycle: coexistence, transition, and deprecation of classical algorithms like ECDSA and RSA.
  • This allows for seamless future upgrades when new PQC standards (e.g., ML-KEM, ML-DSA) are finalized or broken.
02

Hybrid Signature Schemes

Relying solely on a new, unproven PQC algorithm introduces implementation and security risks. Mitigate this with hybrid signatures.

  • Combine a classical signature (e.g., ECDSA) with a PQC signature (e.g., Dilithium) on the same message.
  • Verification requires both signatures to be valid. This maintains security even if one algorithm is compromised.
  • Protocols like X3DH for messaging and Certificate Transparency logs are early adopters of this pattern.
  • The trade-off is increased signature size and verification time, which must be accounted for in system design.
03

Key Management and Cryptographic Debt

Poor key management during transition can lead to cryptographic debt and operational fragility.

  • Key encapsulation mechanisms (KEMs) like Kyber are for key exchange, not direct signing. Use them to establish symmetric keys for bulk encryption.
  • Implement dual-key stacks: generate and store both classical and PQC key pairs for critical identities.
  • Use a key lifecycle manager to track algorithm associations, expiration, and rotation schedules for each key pair.
  • Failure to manage this can result in inaccessible data or broken authentication flows.
04

Performance and System Integration

PQC algorithms often have larger key sizes, signatures, and slower performance, which can break existing system assumptions.

  • ML-KEM-768 public keys are ~1.2KB vs. ECC's 32 bytes. This impacts network payloads and storage.
  • Benchmark throughput and latency for your specific use case (e.g., TLS handshakes, blockchain block validation).
  • Consider hardware acceleration and specialized libraries (e.g., liboqs) for performance-critical paths.
  • Incrementally deploy hybrid schemes in non-critical services first to monitor system impact.
05

Protocol-Level Incompatibilities

Many blockchain and networking protocols have hardcoded assumptions about cryptography that resist hybrid integration.

  • Ethereum's ECDSA recovery-based address generation is fundamental to its account model. A transition requires a new transaction type or account abstraction (ERC-4337).
  • Wire format protocols like TLS 1.3 and X.509 certificates need extensions (e.g., hybrid certificates) to carry dual signatures.
  • Audit all protocol handshakes, message serialization, and consensus rules for fixed algorithm dependencies. Plan for coordinated network upgrades or fork-based activation.
06

Verification and Testing Strategy

Inadequate testing of hybrid cryptographic logic is a critical vulnerability.

  • Implement differential fuzzing between classical and PQC code paths to ensure consistent behavior.
  • Create a test harness that simulates different algorithm failure modes (e.g., a broken PQC algorithm) to verify the system falls back securely.
  • Use property-based testing to validate that hybrid signatures are composed and verified correctly under all edge cases.
  • Test with real-world constraints, including maximum message sizes, bandwidth limits, and hardware security modules (HSMs).
conclusion-next-steps
IMPLEMENTATION ROADMAP

Conclusion and Next Steps

This guide has outlined a practical framework for building a hybrid cryptographic system, a critical step in preparing for the quantum computing era. The journey from theory to production requires careful planning.

Implementing a hybrid system is not a one-time event but a strategic, phased migration. Begin with a comprehensive cryptographic inventory to identify all systems using classical algorithms like ECDSA and RSA. Prioritize assets based on their sensitivity and regulatory requirements. For most projects, the initial phase involves deploying hybrid signature schemes in non-critical, internal systems to validate the architecture and tooling, such as testing a CRYSTALS-Dilithium3 and ECDSA hybrid in a devnet environment.

The next phase involves broader integration. Update your protocol's transaction serialization to support multiple signatures and ensure client libraries (like ethers.js or web3.py) can parse them. Key management systems must be upgraded to handle PQC key generation and storage. Monitor the performance impact, as PQC algorithms have larger key and signature sizes; for example, a Dilithium2 signature is about 2.5KB compared to 64 bytes for ECDSA. This affects gas costs on L1s and data availability on L2s.

Long-term, the goal is cryptographic agility—the ability to swap algorithms with minimal disruption. Design your system with algorithm identifiers and versioned cryptographic suites. Participate in NIST's ongoing standardization process and track the development of projects like the Open Quantum Safe's liboqs. The final step will be transitioning to pure post-quantum cryptography once the standards are mature and widely audited, completing the migration your hybrid system enabled.

For further learning, explore the Open Quantum Safe project for open-source liboqs integrations, review NIST's PQC Standardization Project for official algorithm status, and study implementations in blockchain protocols like QANplatform or Quantum Resistant Ledger for real-world reference architectures.

How to Architect a Hybrid Cryptography System for PQC Transition | ChainScore Guides