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Guides

How to Document ZK-SNARK Design Decisions

A practical guide for developers on structuring and writing documentation for ZK-SNARK circuits, protocols, and implementation choices to ensure clarity, security, and auditability.
Chainscore © 2026
introduction
INTRODUCTION

How to Document ZK-SNARK Design Decisions

A structured approach to creating a comprehensive design document for your zero-knowledge proof system.

Designing a ZK-SNARK (Zero-Knowledge Succinct Non-Interactive Argument of Knowledge) circuit is a complex process involving critical choices about cryptographic primitives, performance trade-offs, and security assumptions. A well-structured design document serves as the single source of truth for your team, auditors, and future maintainers. It forces you to articulate the "why" behind every decision, from selecting a proving system like Groth16 or PLONK to defining the constraints for your specific computation. This guide outlines the essential components of a ZK-SNARK design document, providing a template and rationale for each section.

Start your document with a clear Problem Statement and Goals. Define the specific computation you are proving (e.g., "prove knowledge of a valid SHA-256 preimage" or "prove correct execution of a transaction batch"). Explicitly state the non-goals to set proper expectations. Next, detail the System Architecture. This includes a high-level diagram and description of the components: the prover, verifier, trusted setup (if required), and any auxiliary smart contracts or services. Specify the interfaces and data flow between these components.

The core of the document is the Circuit Design Specification. Here, you must describe the arithmetic circuit or R1CS (Rank-1 Constraint System) in detail. For each gate or constraint, explain the underlying logic and its purpose. Use pseudocode or actual code snippets to illustrate complex relations. This section should also cover the Public and Private Inputs/Outputs (the witness), clearly defining what is revealed to the verifier and what remains hidden. A common pitfall is poorly defined input structures, which can lead to circuit bugs or unintended information leakage.

A critical section is Cryptographic and Security Assumptions. Document your choice of elliptic curve (e.g., BN254, BLS12-381), hash function (e.g., Poseidon, SHA-256), and proving backend (e.g., arkworks, circom). Justify these choices based on security level (bits), performance, and ecosystem support. Explicitly list all security assumptions, such as the hardness of the Discrete Logarithm Problem on your chosen curve or the security of your trusted setup ceremony. This transparency is crucial for auditability.

Finally, include sections on Performance Analysis and Trade-offs (estimated constraint count, prover/verifier time, proof size) and Testing and Verification Strategy. Outline how you will test circuit correctness (e.g., with random witness generation) and the plan for formal audits. Conclude with open questions and potential future optimizations. A thorough design document is not a one-time effort but a living document that evolves with the project, ensuring long-term maintainability and security.

prerequisites
FOUNDATIONAL KNOWLEDGE

Prerequisites

Before documenting ZK-SNARK design decisions, you need a solid grasp of the underlying cryptographic primitives and the specific application's requirements.

A strong foundation in zero-knowledge proof theory is essential. You should understand the core components: the arithmetization process (e.g., converting a computation into a set of polynomial equations via R1CS or Plonkish arithmetization), the polynomial commitment scheme (like KZG, Bulletproofs, or FRI), and the interactive proof protocol that is made non-interactive via the Fiat-Shamir heuristic. Familiarity with concepts like succinctness, soundness, and zero-knowledge properties is non-negotiable. Resources like ZK Whiteboard Sessions by the ZK Podcast or the Proofs, Arguments, and Zero-Knowledge book by Justin Thaler are excellent starting points.

You must also be proficient with the specific ZK framework or library you are using, such as Circom, Halo2, Noir, or gnark. This includes understanding its domain-specific language (DSL), constraint system, and backend prover/verifier architecture. For instance, in Circom, you need to know how to write templates and components that generate Rank-1 Constraint Systems (R1CS). In Halo2, you design circuits within a custom gate and lookup argument paradigm. Documenting decisions is impossible without knowing the framework's capabilities and limitations.

Finally, clearly define the application requirements that will drive your design. This includes the trust model (trusted setup vs. transparent), performance targets (proving time, verification time, proof size), and the computational statement to be proven. Is it a private transaction, a verifiable computation, or an identity attestation? Decisions about hash functions (Poseidon vs. SHA-256), elliptic curve cycles (BN254 vs. BLS12-381), and recursion support all stem from these initial requirements. Documenting the rationale begins with a precise problem statement.

key-concepts
ZK-SNARK DESIGN

Core Documentation Components

Effective documentation for ZK-SNARK systems requires capturing the rationale behind critical cryptographic and engineering choices.

design-rationale-process
DEVELOPER GUIDE

Documenting ZK-SNARK Design Decisions

A systematic approach to recording the critical choices and trade-offs made during the design and implementation of a zero-knowledge proof system.

Effective documentation of a ZK-SNARK's design rationale is crucial for long-term maintenance, security audits, and team collaboration. Unlike standard software, a cryptographic protocol's security depends on subtle choices about its arithmetic circuit, constraint system, trusted setup, and proof/verification keys. A well-maintained design document should answer the why behind every major decision, not just the what. This includes the selection of a proving backend (e.g., Groth16, Plonk, Halo2), the elliptic curve pairing (BN254, BLS12-381), and the hash function used within the circuit. Without this context, future developers may inadvertently introduce vulnerabilities when modifying the system.

Start by creating a structured document that outlines the protocol's high-level goals and non-goals. For each component, detail the considered alternatives and the rationale for the final choice. For instance, if you chose the Groth16 proving system for its small proof size and fast verification, document that you prioritized on-chain verification cost over prover time. Conversely, if you selected Plonk for its universal trusted setup, note the trade-off of slightly larger proofs. Include references to academic papers, such as the original Groth16 paper or the Plonk paper, that informed your decision. This establishes the E-E-A-T (Experience, Expertise, Authoritativeness, Trustworthiness) of your design process.

The core of the documentation is the circuit design. For every constraint in your arithmetic circuit, explain the business logic or cryptographic primitive it enforces. Use code snippets to illustrate. For example, when documenting a Merkle tree inclusion proof within a circuit, show the R1CS constraints or the Halo2 configure method that wires the hash computations and path checks. Comment on why a specific hash function (e.g., Poseidon, MiMC) was chosen for circuit efficiency. Document any optimizations, like custom gates or lookup tables, and their impact on constraint count and prover performance. This level of detail is invaluable for auditors and for debugging during circuit development.

Finally, document the trusted setup ceremony and key generation process. Record the parameters used: the size of the circuit (number of constraints and wires), the structured reference string (SRS), and how the proving and verification keys were derived. If you used a public ceremony (like the Perpetual Powers of Tau), link to its transcript and participation record. If you performed a private setup, document the security measures taken (multi-party computation, secure hardware) and the disposal of toxic waste. This transparency is critical for users to trust that no one can generate fraudulent proofs. Conclude the document with a section on known limitations, potential attack vectors, and planned future improvements to the design.

circuit-documentation
ZK-SNARK DEVELOPMENT

Documenting Circuit Logic and Constraints

A systematic approach to documenting the design decisions, constraints, and assumptions in your zero-knowledge circuits to ensure auditability, maintainability, and security.

Effective documentation for a ZK-SNARK circuit is not an afterthought; it is a critical component of the development process. Unlike traditional software, a circuit's logic is defined by a set of constraints that must be satisfied for a proof to be valid. Good documentation explains the why behind these constraints, mapping high-level business logic (e.g., "user is over 18") to the low-level arithmetic operations enforced by the proving system. This is essential for security reviews, as auditors need to verify that the constraints correctly implement the intended protocol without introducing vulnerabilities or unintended behaviors.

Start by documenting the public and private inputs to your circuit. Clearly define each signal: its name, data type (e.g., field element, boolean), its role in the computation, and any preconditions. For example, a private input birthdateTimestamp should be documented with its expected format (Unix timestamp) and the range checks applied to it. This input specification acts as a contract between the circuit and any front-end or prover client, preventing mismatches that could lead to failed proofs or incorrect verification.

The core of your documentation should be the constraint system. For each logical component or function, describe the constraints in plain language alongside the code. Use comments to explain the purpose of each constraint. For instance, in a Circom circuit, don't just write signalA * signalB === signalC; annotate it: // Enforces the relationship: total = price * quantity. Group related constraints into sections and document any assumptions about the field modulus or the relationships between variables that are not explicitly constrained but are assumed to hold.

Include a design rationale section for non-obvious choices. Why was a specific hash function (Poseidon, MiMC) chosen? What trade-offs were considered for the proof size vs. prover time? Document any optimizations, such as custom gate designs or the use of lookup tables, and reference the papers or resources that informed these decisions. This context is invaluable for future developers who need to modify the circuit or understand its performance characteristics.

Finally, maintain a test vector and trace document. For key circuit paths, provide example inputs, the expected intermediate signals, and the final public outputs. This serves as an executable specification and is crucial for debugging. Tools like circom's wtns export or snarkjs's wtns debugging output can generate these traces. Documenting these examples makes it easier to verify the circuit's behavior and onboard new team members, turning abstract constraints into concrete, verifiable computations.

CRITICAL COMPONENTS

Trust Assumptions and Security Model

Comparison of trust models and security properties for different ZK-SNARK proving systems and setup ceremonies.

Security PropertyGroth16 (Trusted Setup)PLONK (Universal Setup)STARKs (Transparent)

Requires Trusted Setup

Setup Type

Circuit-Specific

Universal / Updatable

Transparent

Post-Quantum Security

Proof Size

~200 bytes

~400 bytes

~45-200 KB

Verification Time

< 10 ms

< 50 ms

~10-100 ms

Recursive Composition

Knowledge Soundness

Succinctness

parameter-justification
CRYPTOGRAPHIC AUDIT TRAIL

How to Document ZK-SNARK Design Decisions

A systematic approach to creating a defensible audit trail for the security parameters in your zero-knowledge proof system.

Selecting parameters for a ZK-SNARK system—such as the elliptic curve, field size, and security level—is a foundational security decision. Documentation is not an afterthought; it is a critical component of the design process that justifies your choices to auditors, users, and future maintainers. A well-documented rationale demonstrates adherence to E-E-A-T (Experience, Expertise, Authoritativeness, Trustworthiness) principles by showing a deliberate, informed process rather than arbitrary selection. This guide outlines a framework for creating this essential cryptographic audit trail.

Begin by documenting the threat model and security goals. Explicitly state what your system is designed to protect against (e.g., 128-bit security against quantum computers via Grover's algorithm, or 100-bit security in the classical setting). Reference established standards from organizations like NIST or IETF. For example, if targeting 128-bit post-quantum security, cite NIST's Post-Quantum Cryptography project and explain how your parameter choices, such as using the BLS12-381 curve with a specific embedding degree, achieve that target. This links abstract security goals to concrete mathematical properties.

For each major parameter, create a dedicated section in your technical specification or README. Structure each justification around three pillars: the choice, the alternatives considered, and the trade-offs accepted. For the elliptic curve, document why you chose BN254 over BLS12-381 (or vice versa), citing factors like existing ecosystem support (snarkjs, circom), performance characteristics (pairing speed, proof size), and any known vulnerabilities or optimizations. If you select a non-malleability flag or a specific hash function for the Fiat-Shamir transform, explain its role in preventing protocol-level attacks.

Include concrete code snippets and configuration blocks to ground the discussion. A parameter file or a constructor function in your codebase should be explicitly referenced. For instance:

rust
// src/parameters.rs
// Security: Targets 128-bit resistance.
// Rationale: See SPEC.md §3.1 for curve comparison.
const CURVE: Curve = Curve::Bls12_381;
const SECURITY_BITS: u32 = 128;

This creates a direct link between the living code and the static documentation, making the rationale auditable. Use tools like cargo-audit or slither checks as part of your CI/CD to ensure these parameters are not inadvertently overridden.

Finally, maintain a change log for cryptographic parameters. Any modification to a core security parameter must be treated with the gravity of a consensus-breaking upgrade. The log should record the date, the parameter changed (e.g., increasing the number of rescue hash rounds from 10 to 12), the catalyst (e.g., a new cryptanalysis paper), the decision-making process, and the authorizing party. This historical record is invaluable for incident response and demonstrates a mature security posture. Store this log alongside your protocol specification in a version-controlled system.

implementation-notes
IMPLEMENTATION NOTES AND OPTIMIZATION LOG

How to Document ZK-SNARK Design Decisions

A systematic guide to creating a living document that tracks the rationale, trade-offs, and performance metrics behind your zero-knowledge proof system.

A ZK-SNARK implementation log is a critical artifact for any production-grade cryptographic system. Unlike standard code comments, it captures high-level design decisions, cryptographic assumptions, and performance trade-offs made during development. This document serves multiple stakeholders: it helps new team members understand the system's architecture, provides auditors with clear reasoning for security choices, and creates a historical record for future optimization. Essential sections include a protocol specification (e.g., Groth16, Plonk), the chosen proving system backend (like Bellman, Arkworks, or Circom), and the initial constraints and goals.

The core of the log should detail the circuit design. Document the mapping of your computational problem into Rank-1 Constraint System (R1CS) or Plonkish constraints. For each major component, explain the why: Why use a 32-bit range check instead of a 255-bit one? Why implement a custom lookup table? Include snippets showing the constraint logic, referencing specific files and functions. This section should also note any trusted setup parameters used, such as the Powers of Tau ceremony transcript URL and the contribution hash, to ensure verifiable setup integrity.

Performance optimization is an iterative process. Your log must chronicle each optimization attempt with quantifiable results. For example: "Switched from a bitwise decomposition to a 4-bit windowed scalar multiplication, reducing constraints by 15% but increasing prover time by 5%." Record metrics like constraint count, witness generation time, proving time, and proof size for each major version. Use tools like criterion for benchmarks. This creates a data-driven history that prevents regression and highlights successful strategies, such as effective use of custom gates in Plonk or optimal hash function selection.

Security considerations require thorough documentation. List all cryptographic assumptions (e.g., the elliptic curve's security, the soundness of the Fiat-Shamir transform). Detail the rationale behind parameter choices, like the size of the scalar field or the number of challenge rounds. For any potential vulnerabilities considered and mitigated—such as side-channel attacks in witness computation or entropy sources for randomness—document the threat model and the implemented countermeasure. This transparency is invaluable for audits and formal verification efforts.

Finally, maintain a change log and future work section. The change log should version entries, linking commits to documented decisions. The future work section outlines known limitations, potential optimizations identified but not yet implemented (e.g., "Investigate recursive proof aggregation for batch verification"), and open research questions. This transforms the document from a static report into a living guide that directs the project's ongoing evolution and ensures institutional knowledge is preserved beyond individual contributors.

tools-templates
ZK-SNARK DESIGN

Tools and Documentation Templates

Systematic documentation of design decisions is critical for ZK-SNARK protocol security, auditability, and team onboarding. These templates and tools provide structured frameworks.

04

Security Assumptions & Threat Model

A clear enumeration of the cryptographic and system security assumptions underlying your ZK-SNARK implementation. This directly informs audit scope and risk assessment.

  • Key Areas: Underlying elliptic curve security (e.g., BN254, BLS12-381), knowledge soundness of the proof system, and trusted setup integrity.
  • Threats to Model: Prover malleability, verifier front-running, and trusted setup compromise.
  • Output: A prioritized list of assumptions from "must hold" to "failure is acceptable."
05

Performance Benchmarking Log

A standardized template for tracking the performance characteristics of your proving system across iterations. Essential for justifying design choices.

  • Metrics to Log: Proving time, verification time, proof size, memory footprint, and constraint count.
  • Context Variables: Hardware specs, software versions (e.g., snarkjs v0.7.0), and circuit parameters.
  • Use Case: Demonstrating that a switch to a recursive SNARK reduced on-chain verification gas cost by 70%.
06

ZK Proof System Selection Framework

A decision matrix template for evaluating different ZK proof systems (SNARKs, STARKS, Bulletproofs) at project inception.

  • Evaluation Criteria: Trusted setup requirement, proof size, verification speed, prover complexity, and ecosystem support.
  • Comparison Points: Groth16 (small proofs) vs. PLONK (universal trusted setup) vs. STARKs (transparent, no trust).
  • Actionable Output: A scored matrix leading to a recommended system based on application needs (e.g., on-chain vs. off-chain verification).
ZK-SNARK DEVELOPMENT

Frequently Asked Questions

Common questions and solutions for developers implementing zero-knowledge proof systems, focusing on design decisions, performance, and security.

The primary difference is the generation of the Common Reference String (CRS), a critical public parameter used in proof generation and verification.

Trusted Setup (e.g., Groth16):

  • Requires a multi-party ceremony where participants collaboratively generate the CRS.
  • The ceremony is "trusted" because if even one participant is honest and destroys their secret "toxic waste," the system remains secure.
  • This setup is a one-time, ceremony-dependent process.

Transparent Setup (e.g., STARKs, Bulletproofs):

  • Does not require a trusted ceremony. The CRS is generated from public, verifiable randomness.
  • Offers stronger trust assumptions as there is no secret toxic waste to manage.
  • Often results in larger proof sizes and slower verification compared to trusted-setup SNARKs.

The choice impacts your protocol's trust model, upgradeability, and performance profile.

conclusion
IMPLEMENTATION GUIDE

Conclusion and Next Steps

This guide has covered the core principles for documenting ZK-SNARK design decisions. The final step is to integrate these practices into your development workflow.

Effective documentation is not a one-time task but an integral part of the ZK-SNARK development lifecycle. By systematically recording your choices for the trusted setup, circuit architecture, and cryptographic primitives, you create a verifiable audit trail. This practice is essential for security reviews, team onboarding, and protocol maintenance. Tools like circom's component system or Noir's module structure naturally encourage this documentation-first approach.

Your next step should be to formalize this process. Create a standard template for your project, perhaps as a DESIGN.md file in your circuit repository. This document should answer the key questions covered: the problem statement, the chosen proving system (e.g., Groth16, Plonk), the rationale behind the circuit structure, and the constraints of the trusted setup. Referencing academic papers like Groth16 or the Plonk paper adds authority.

To deepen your understanding, explore advanced topics. Study how projects like Tornado Cash or zkSync document their circuits and verifier contracts. Experiment with zero-knowledge virtual machines (zkVMs) like zkEVM, which abstract circuit design but still require careful parameter documentation. Engaging with the community on forums like the ZKProof Standards effort or the Zero Knowledge Podcast can provide ongoing insights into evolving best practices.

How to Document ZK-SNARK Design Decisions | ChainScore Guides