Free 30-min Web3 Consultation
Book Consultation
Smart Contract Security Audits
View Audit Services
Custom DeFi Protocol Development
Explore DeFi
Full-Stack Web3 dApp Development
View App Services
Free 30-min Web3 Consultation
Book Consultation
Smart Contract Security Audits
View Audit Services
Custom DeFi Protocol Development
Explore DeFi
Full-Stack Web3 dApp Development
View App Services
Free 30-min Web3 Consultation
Book Consultation
Smart Contract Security Audits
View Audit Services
Custom DeFi Protocol Development
Explore DeFi
Full-Stack Web3 dApp Development
View App Services
Free 30-min Web3 Consultation
Book Consultation
Smart Contract Security Audits
View Audit Services
Custom DeFi Protocol Development
Explore DeFi
Full-Stack Web3 dApp Development
View App Services
decentralized-science-desci-fixing-research
Blog

The Future of Preprints Is Permanent and Forkable

Immutable preprints on Arweave or IPFS become living documents that can be forked, updated, and built upon, creating a dynamic public record of scientific discourse. This is the core infrastructure shift for decentralized science (DeSci).

introduction
THE PERMANENT RECORD

Introduction

Blockchain technology is re-architecting academic publishing by making preprints immutable, forkable assets, moving beyond centralized repositories like arXiv.

Preprints are ephemeral databases. Current platforms like arXiv and SSRN operate as centralized authorities, holding the power to delete or alter submissions, creating a single point of failure for the historical record.

Blockchain provides canonical permanence. Publishing a preprint's hash to a public ledger like Ethereum or Arweave creates an immutable, timestamped proof of existence that no single entity can revoke.

Forkability enables scholarly evolution. Unlike static PDFs, on-chain preprints become forkable intellectual objects. Researchers can create verifiable derivatives, akin to code forks on GitHub, directly on networks like IPFS.

Evidence: Projects like ResearchHub and decentralized science (DeSci) protocols are already building this future, treating papers as composable NFTs with on-chain citation graphs.

thesis-statement
THE FORKABLE CANON

The Core Argument

Academic preprints will transition to a permanent, forkable, and financially incentivized substrate, mirroring the evolution of open-source software on blockchains like Ethereum.

Permanence is the prerequisite for forking. The current preprint model on centralized servers like arXiv is ephemeral and mutable, preventing true ownership and derivative work. A permanent data layer, anchored on a decentralized network like Arweave or Filecoin, creates an immutable canonical record. This is the foundational shift.

Forkability drives rapid iteration. Just as code forks on GitHub accelerate software development, forkable research allows competing interpretations, replications, and extensions to branch from a canonical source. This creates a competitive marketplace of ideas where the best methodology, not the most prestigious journal, wins.

Token incentives align contributors. The current system's incentives are broken, rewarding publication over reproducibility. A forkable token model, similar to how Optimism's RetroPGF funds public goods, can directly reward data providers, replicators, and peer reviewers who add value to the canonical fork.

Evidence: The Uniswap v4 hook ecosystem demonstrates this future. A canonical, immutable core (v4) is designed for permissionless forking and extension by third-party developers, creating a vibrant, competitive landscape of specialized implementations from a single source of truth.

ARCHITECTURAL FOUNDATIONS

Static vs. Forkable: A Protocol Comparison

Core trade-offs between immutable, static protocols and forkable, upgradeable systems for decentralized applications.

Feature / MetricStatic Protocol (e.g., Uniswap V2, MakerDAO)Forkable Protocol (e.g., Aave, Compound)Intent-Based System (e.g., UniswapX, Across)

Core Architecture

Immutable bytecode

Governance-upgradable contracts

Declarative off-chain settlement

Protocol Forkability

Developer Lock-in

Permanent

Governance-dependent

Solver-dependent

Security Model

Time-tested, static audit surface

Dynamic, requires continuous governance security

Relies on solver competition & reputation

Upgrade Lead Time

N/A (requires migration)

7-14 days (typical timelock)

< 1 block (solver discretion)

Liquidity Fragmentation Risk

High (via hard forks)

Medium (via governance capture)

Low (aggregates all liquidity sources)

Example Failure Mode

Stuck with irreparable bug

Governance attack pushes malicious upgrade

Solver censorship or MEV extraction

deep-dive
THE FORKABLE CANON

The Mechanics of a Living Document

Preprints evolve into permanent, on-chain artifacts that are versioned, forked, and cited with cryptographic precision.

Permanent on-chain artifacts replace ephemeral PDFs. A paper's final state is a cryptographic commitment on a data availability layer like Arweave or Celestia, creating an immutable, timestamped record.

Forking is the new citation. Researchers don't just reference a paper; they fork its canonical state on platforms like Radicle to create verifiable derivative works, establishing a direct lineage of intellectual debt.

Versioning is explicit and granular. Every substantive edit or community annotation creates a new, linked version, moving beyond the opacity of arXiv's version history to a Git-like commit graph.

Evidence: The model mirrors package management in software. Just as a Node.js project locks dependencies via package-lock.json, a research paper's immutable hash locks its exact dependencies and prior versions.

protocol-spotlight
THE PERMANENT STACK

Who's Building This Future?

A new infrastructure layer is emerging to make research immutable, composable, and credibly neutral.

01

Arweave: The Permanent Data Layer

Provides permanent, low-cost storage as the foundational bedrock. It's not a database; it's a global, uncensorable hard drive.\n- Pay-once, store forever economic model\n- ~$0.01 per MB for permanent storage\n- Enables truly immutable data permanence for datasets and models

~$0.01/MB
Permanent Cost
100+ PB
Data Stored
02

The Problem: Centralized Gatekeeping

Traditional preprint servers like arXiv are centralized chokepoints. They control hosting, can retroactively censor, and create siloed data that can't be programmatically forked or built upon.\n- Single point of failure for access and preservation\n- No native versioning or forkability\n- Slow, manual moderation processes

1
Central Point
Days-Weeks
Moderation Lag
03

The Solution: Forkable Data Primitives

Treat research objects—papers, datasets, code—as immutable, addressable assets on a permanent ledger. This creates a composable knowledge graph.\n- IPFS CIDs & Arweave TX IDs as permanent references\n- Smart contracts for attribution, licensing, and citations\n- Native forking enables competing analyses on the same base data

100%
Data Integrity
Atomic
Fork Speed
04

Decentralized Identity & Attribution

Solves the credit assignment problem in an open, forkable system. Uses verifiable credentials and on-chain reputation to ensure contributors get credit.\n- Self-sovereign author identities (e.g., Ethereum ENS, Veramo)\n- Immutable proof-of-existence and timestamping\n- Programmable royalty streams for citations and reuse

Zero-Trust
Verification
Auto-Split
Royalties
05

The Problem: Ephemeral & Silos

Current digital research objects are fragile. Links rot, supplementary data disappears, and platforms can vanish. Knowledge is trapped in walled gardens (Google Scholar, ResearchGate) that inhibit innovation.\n- ~20% link rot in academic references within a decade\n- No interoperability between publishing, peer review, and data platforms\n- Vendor lock-in stifles meta-analysis and tooling

~20%
Link Rot
Zero
Composability
06

The Solution: Credibly Neutral Protocols

Building the TCP/IP for knowledge, not another platform. Protocols like Lit Protocol for access control and Tableland for structured data enable permissionless innovation on a shared state.\n- No single entity controls the stack\n- Anyone can build a front-end, peer-review system, or analytics engine\n- Data outlives the applications built on it

Permissionless
Innovation
Permanent
Foundation
counter-argument
THE DATA

The Skeptic's View (And Why They're Wrong)

Critics argue permanent, forkable preprints are a solution in search of a problem, but onchain data and composability trends prove otherwise.

Skepticism targets utility. Critics claim permanent preprint archives like Arweave are overkill for academic publishing. They argue centralized databases suffice for most research, making decentralized storage a costly, unnecessary layer.

This view ignores composability. A preprint stored on Arweave or IPFS is a forkable, composable asset. It becomes a primitive for onchain peer review, citation tracking, and funding mechanisms that centralized silos cannot support.

The evidence is in adoption. Protocols like Livepeer for video and Ocean Protocol for data already use permanent storage as a foundational layer. The demand for immutable, programmable data backends is proven.

Forkability drives innovation. A forked research paper is a new branch of inquiry. This mirrors how Ethereum forks like Optimism and Arbitrum spawned entire ecosystems from a shared base state.

risk-analysis
PERMANENT PREPRINTS

What Could Go Wrong? The Bear Case

An immutable, forkable record of scientific discourse introduces novel attack vectors and systemic risks.

01

The Sybil Attack on Reputation

Decentralized reputation systems like DeSci Rep or ResearchHub become prime targets. Attackers can fork a preprint, create thousands of fake peer reviews, and artificially inflate credibility to push fraudulent or low-quality work.

  • Undermines Trust: Legitimate peer review is drowned out by noise.
  • Economic Incentive: Bad actors profit from manipulating tokenized reputation or grant distributions.
1000x
Fake Reviews
$0
Sybil Cost
02

The Immutable Error Problem

Permanence is a double-edged sword. A foundational paper with a critical, discovered error cannot be 'unpublished'. While forks can correct it, the original flawed version persists forever, polluting the citation graph.

  • Citation Hell: Future work may inadvertently cite the erroneous version.
  • Fork Proliferation: The canonical record fragments into competing corrected versions, confusing the field.
Permanent
Error Lifespan
+∞
Fork Potential
03

Legal & Copyright Quagmire

Forking a preprint and minting it as a new NFT could violate copyright, especially for work later published in traditional journals. Platforms like arXiv have licensing terms that forking may breach.

  • Legal Liability: Researchers and platforms face cease-and-desist orders.
  • Chilling Effect: Institutions may ban researchers from using permanent preprint networks.
High
Legal Risk
Slow
Court Resolution
04

The Data Avalanche & Archive Bloat

Every minor revision, comment, and fork is stored on-chain or in decentralized storage like Arweave or IPFS. The system incentivizes volume over quality, leading to unsustainable data growth.

  • Cost Explosion: Storing petabytes of low-value forks becomes economically prohibitive.
  • Search Collapse: Finding signal in the noise becomes computationally intractable.
PB+
Storage Bloat
-99%
Signal/Noise
05

Governance Capture by Whales

Protocols that use token voting (e.g., DeSci DAOs) to curate or fund research are vulnerable. Large token holders (whales) can dictate which research lines are promoted, replicating and automating the gatekeeping of traditional academia.

  • Centralization: Decision-making power concentrates, defeating decentralization goals.
  • Ideological Bias: Research agendas are set by capital, not scientific merit.
<1%
Holders Control
100%
Voting Power
06

The Oracle Problem for Verification

Automated smart contracts for bounty payouts or replication rewards require oracles to verify real-world outcomes (e.g., 'was this experiment successfully replicated?'). Oracles like Chainlink become single points of failure or manipulation.

  • Trust Assumption: Shifts trust from reviewers to oracle operators.
  • Manipulable Outcomes: Bad actors can corrupt the oracle to falsely claim success and collect bounties.
1
Failure Point
$M
Bounty at Risk
future-outlook
THE PERMANENT RECORD

The 24-Month Horizon

Preprints will become immutable, verifiable artifacts, creating a permanent, forkable foundation for scientific discourse.

Preprints become permanent artifacts. The current model of mutable PDFs on centralized servers like arXiv will be replaced by content-addressed storage on networks like Arweave or IPFS. This creates a canonical, timestamped record that is immune to deletion or retroactive alteration.

Forkability enables parallel discourse. A paper's data, code, and narrative become a forkable repository, similar to a codebase on GitHub. Competing interpretations or methodological critiques can branch off the original work, creating verifiable lineages of scientific argument.

This shifts authority to verification. The prestige of a journal's brand diminishes as the ability to cryptographically verify provenance, data integrity, and citation graphs becomes the primary signal of trust. Tools like Ocean Protocol for data and Code Ocean for execution will be integrated directly into the record.

Evidence: The Arweave network already stores over 140 terabytes of permanent data, demonstrating the technical and economic viability of this model for scholarly communication. Platforms like ResearchHub are building the initial interfaces for this future.

takeaways
THE PERMANENT KNOWLEDGE GRAPH

TL;DR for Builders and Funders

Preprints are evolving from static PDFs into dynamic, on-chain primitives that redefine academic ownership, collaboration, and funding.

01

The Problem: Academic Publishing is a $30B+ Rent-Seeking Industry

Centralized journals extract value without adding it, creating ~12-month publication delays and paywalls that lock away knowledge. The system is optimized for rent extraction, not truth discovery or speed.

  • Value Capture: Publishers capture value from public funding and author labor.
  • Inefficient Discovery: Novel research is siloed and slow to propagate.
  • No Composability: Data, code, and findings are trapped in static formats.
12-24mo
Delay
$30B+
Market Size
02

The Solution: Arweave + Smart Contracts = Permanent, Forkable Objects

Store the canonical research object—manuscript, data, code—permanently on Arweave. Attach smart contracts (on Ethereum, Solana, etc.) to manage attribution, royalties, and governance. This creates a forkable knowledge base.

  • Permanent Storage: Data is immutable and globally accessible, akin to IPFS but with perpetual funding.
  • Native Monetization: Authors can embed royalty streams via Superfluid or similar.
  • Fork as Collaboration: Anyone can permissionlessly fork and build upon the work, creating verifiable lineage.
~$5
Store Forever
100%
Uptime
03

New Primitive: The Verifiable Research DAO

A preprint is no longer a document; it's the seed for a DAO. Contributors (reviewers, data analysts, replicators) earn tokens or reputation (SourceCred, Coordinape) for verifiable work. Funding (Gitcoin Grants, MolochDAO) is programmatically tied to milestones.

  • Merit-Based Funding: Retroactive Public Goods Funding models directly reward impactful work.
  • Trustless Collaboration: Contributions are on-chain, reducing credentialism.
  • Liquid Reputation: Contributor stakes and reputation are portable assets.
10x+
More Contributors
DAO-native
Funding
04

The Killer App: On-Chin Peer Review as a Prediction Market

Replace opaque, slow peer review with a staked, time-bound prediction market (e.g., Polymarket-style). Reviewers stake on a paper's validity or impact. Accurate predictions earn rewards; faulty ones lose stake. This aligns incentives for rigorous review.

  • Skin in the Game: Reviewers are financially incentivized to be correct, not just critical.
  • Signal Over Noise: Market odds provide a clear, crowdsourced quality score.
  • Automated Execution: Smart contracts auto-distribute royalties based on market outcomes.
~1 week
Review Cycle
Staked
Reputation
05

Architectural Imperative: Decouple Storage, Logic, and Front-Ends

Follow the modular blockchain ethos. Arweave for permanent storage. Ethereum or Solana for high-value logic (royalties, DAO governance). IPFS or Ceramic for mutable metadata. Farcaster-like clients for discovery. This prevents vendor lock-in and ensures upgradeability.

  • Resilience: No single point of failure.
  • Specialization: Each layer uses the optimal tech stack.
  • Permissionless Innovation: Anyone can build a new interface or analytics tool on the open data layer.
Modular
Stack
Unstoppable
Apps
06

Investment Thesis: Capture the Protocol, Not the Journal

The value accrual shifts from publishing brands to the protocols and primitives that enable the new system. This mirrors the shift from MySpace to Facebook to the Lens Protocol. Invest in the infrastructure for permanent, composable knowledge.

  • Protocol Cash Flows: Fees from minting, forking, and royalty distribution.
  • Data Layer Moats: The permanent graph of forked research becomes an unassailable asset.
  • Vertical Integration: Own the stack from storage (Arweave) to discovery engines.
Protocol
Moats
New Asset Class
Knowledge
ENQUIRY

Get In Touch
today.

Our experts will offer a free quote and a 30min call to discuss your project.

NDA Protected
24h Response
Directly to Engineering Team
10+
Protocols Shipped
$20M+
TVL Overall
NDA Protected Directly to Engineering Team
Why Immutable, Forkable Preprints Will Replace Journals | ChainScore Blog